eCommons

 

Solution-Phase and Biophysical Characterization of Sequence-defined Oligothioetheramides

Other Titles

Abstract

Nature ubiquitously utilizes precise chemical arrangement to create and tune advanced structures and interactions. Within synthetic and natural scaffolds, this arrangement can often be read as a “sequence,” which creates particular functions and/or phenotypes. Much research has sought to understand chemical sequences to guide the design of molecules and materials for therapeutic benefit. Examples and additional background are discussed in Chapter 1. In this work, I have explored a new class of sequence-defined polymers called oligothioetheramides (oligoTEAs) described in Chapter 2 in search of sequence-structure-function relationships by employing solution-phase and biophysical characterization. In Chapter 3, we demonstrate the challenging solution-phase structural characterization of a flexible sulfonated oligoTEA, utilizing a range of techniques including variable temperature pulse field gradient (PFG) NMR, double electron−electron resonance (DEER), molecular dynamics (MD) simulations, as well as the combination of PFG NMR and DEER within Stokes−Einstein−Sutherland diffusion theory. I apply these techniques along with biophysical characterization toward a specific class of antibacterial oligoTEAs to evaluate their potential as antibiotics. Motivated by the need to new antibiotic development, these oligoTEAs are designed as membrane-targeting AMP mimetics, featuring cationic and hydrophobic groups to potently and selectively disrupt bacterial membranes. However, this physical design has struggled to guide broad success for AMPs in vivo. Thus, we have investigated additional properties for optimization of these antimicrobials. We completed solution-phase characterization including small- and wide-angle x-ray scattering (SAXS/WAXS), as well as fluorescence microscopy and surface plasmon resonance (SPR), both with Staphylococcus aureus mimetic membranes. In Chapter 4, I have examined the characterization a pair of constitutional oligoTEA isomers that show a unique ~ 10-fold difference in antibacterial potency. In Chapter 5, I present the characterization of oligoTEAs with different cationic groups and with hydrophobic backbone sequences. Across all studies, oligoTEAs direct the formation of multimeric lipid aggregates that correlates with biological activity and helps establish a framework for the kinetic mechanism of action. Thus, revealing new parameters for antimicrobial optimization. Overall, this work highlights the importance of sequence definition and biophysical characterization for the design of new membrane-targeting antibiotics.

Journal / Series

Volume & Issue

Description

Sponsorship

Date Issued

2019-05-30

Publisher

Keywords

Chemical engineering; antibacterial; antibiotics; membrane-targeting; oligothioetheramides; sequence-defined oligomers; Chemistry; Polymer chemistry

Location

Effective Date

Expiration Date

Sector

Employer

Union

Union Local

NAICS

Number of Workers

Committee Chair

Alabi, Christopher Akinleye

Committee Co-Chair

Committee Member

Cohen, Claude
Wiesner, Ulrich B.
Daniel, Susan

Degree Discipline

Chemical Engineering

Degree Name

Ph.D., Chemical Engineering

Degree Level

Doctor of Philosophy

Related Version

Related DOI

Related To

Related Part

Based on Related Item

Has Other Format(s)

Part of Related Item

Related To

Related Publication(s)

Link(s) to Related Publication(s)

References

Link(s) to Reference(s)

Previously Published As

Government Document

ISBN

ISMN

ISSN

Other Identifiers

Rights

Rights URI

Types

dissertation or thesis

Accessibility Feature

Accessibility Hazard

Accessibility Summary

Link(s) to Catalog Record