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Chronic Wasting Disease Surveillance Expense Cap Software

File(s)
ExpenseCapSoftware_Readme.pdf (476.3 KB)
ExpenseCapSoftware.zip (230.96 KB)
Permanent Link(s)
https://doi.org/10.7298/r4jy-bp10
https://hdl.handle.net/1813/112849
Collections
CVM Research
Author
Them, Cara E.
Hanley, Brenda J.
Mitchell, Corey I.
Gagne, Roderick B.
Ahmed, Md Sohel
Schuler, Krysten L.
Abstract

The Chronic Wasting Disease Surveillance Expense Cap Software (hereafter, “Software”) computes the maximal number of disease surveillance samples that ought to be collected in each county (or other administrative area) the goal of the disease surveillance program is to detect chronic wasting disease (CWD) in white-tailed deer (Odocoileus virginianus). Using an additive approach, the Software pinpoints the combination of samples that should be tested for two collection categories of deer (hunter harvested and non-hunter harvested) in each county (or other administrative area) of the state to ensure sampling of highest risk counties, while keeping the overall cost of the surveillance program within the predetermined budget. Inputs to the additive expense cap algorithm in the Software broadly include the Optimization Matrix (costs, benefits, and starting prevalence of CWD for each collection category and county or other administrative unit) and the Historical Data (previously enacted sampling strategy in each county or other administrative area). Agencies may further parameterize their Software to achieve specific management objectives, including monitoring known infections, searching for new infections, and providing detailed information to the public. The Software includes (redacted) Optimization Matrices and (redacted) Historical Data from Pennsylvania, US, but the software may be adapted for use in other states and provinces.

Description
The Chronic Wasting Disease Surveillance Expense Cap Software is shared under an MIT License. Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the Software), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED AS IS, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
Sponsorship
Financial support comes from (1) Michigan Disease Initiative – Optimizing CWD Surveillance: Regional Synthesis of Demographic, Spatial, and Transmission-Risk Factors (2019); (2) Tennessee Wildlife Resources Agency - Modeling Risk of Infection for Individually Harvested Deer & Estimating Prevalence When Sampling is Limited (2020); (3) Michigan Disease Initiative - SOP4CWD Dashboard: A Web Application for Disease Visualization and Data-Driven Decisions (2020); (4) Multistate Conservation Grant Program - Surveillance Optimization Project for Chronic Wasting Disease: Streamlining a Web Application for Disease Visualization and Data-Driven Decisions (2021).
Date Issued
2023-03-10
Keywords
Surveillance quotas
•
chronic wasting disease
•
white-tailed deer
Type
software

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