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  4. Cooptions and convergence of diverse Tn7-like transposons

Cooptions and convergence of diverse Tn7-like transposons

File(s)
Hsieh_cornellgrad_0058_13394.pdf (10.95 MB)
Permanent Link(s)
https://doi.org/10.7298/4axd-s397
https://hdl.handle.net/1813/112931
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Cornell Theses and Dissertations
Author
Hsieh, Shan-Chi
Abstract

Diverse mobile genetic elements shape bacterial genome evolution and provide countless genomics tools. Tn7-like transposons are notable for their tight control of targeted transposition. In addition, the modular features of Tn7-like transposons allowed them to coopt and evolve diverse targeting pathways. CRISPR-associated transposons (CAST) are prime examples of the cooption process. In this thesis, I briefly introduce Tn7-like transposons, transposition mechanisms, pathway diversity, examples of gene cooption, and evolutionary convergence in Chapter 1. Chapter 2 presents my discovery and characterization of a novel cooption of type I-D CRISPR system by a Tn7-like transposon. Chapter 3 presents how type I-F3 CAST convergently evolved dual pathway lifestyles using categorized spacers and the genetic cooption of XRE-family regulators. Chapter 4 presents my bioinformatic work on type V-K CAST and the convergently evolved dual pathway lifestyles using categorized spacers facsimile to the type I-F3 CAST.

Description
277 pages
Date Issued
2022-12
Keywords
CAST
•
CRISPR
•
Tn7
•
Transposon
Committee Chair
Peters, Joseph
Committee Member
Ke, Ailong
Chappie, Joshua
Degree Discipline
Microbiology
Degree Name
Ph. D., Microbiology
Degree Level
Doctor of Philosophy
Type
dissertation or thesis
Link(s) to Catalog Record
https://newcatalog.library.cornell.edu/catalog/15644069

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