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  4. Single Particle Structural Virology of Paramyxoviruses

Single Particle Structural Virology of Paramyxoviruses

File(s)
Upadhye_cornellgrad_0058F_14902.pdf (37.53 MB)
Permanent Link(s)
https://doi.org/10.7298/4b5g-5m69
https://hdl.handle.net/1813/117658
Collections
Cornell Theses and Dissertations
Author
Upadhye, Viraj
Abstract

Paramyxoviruses represent some of the most contagious (Measles) and pathogenic (Nipah) viruses present on our planet; therefore, understanding their assembly is of the utmost importance. Members of the Paramyxoviridae family all encode four major structural proteins Nucleocapsid (N), Matrix (M), Fusion (F) and Attachment Glycoprotein (G) which assemble with membranes and nonstructural proteins Phosphoprotein (P), and Polymerase (L) to form infectious virions. Interestingly, paramyxoviruses are pleomorphic, meaning no two virions appear to be the same, and particle shapes can vary drastically. The work in this dissertation focuses on the development and application of highly sensitive technologies to interrogate the morphology and protein contents of individual paramyxoviral particles. I was able to develop a protocol to generate Nipah virus-like-particles (VLPs) in high concentration and purity for flow virometry and cryo-electron microscopy (cryoEM) analyses. In the first part of this dissertation, I reviewed hardware and software technologies required for flow virometry analysis and demonstrated that paramyxoviruses are too fragile for viral sorting. The M protein forms a lattice of dimers that binds membranes and orchestrates viral assembly. In the second and major part of this dissertation, I directly observed the interactions between the M lattice and structural proteins N, F, and G by cryoEM and demonstrated that morphology of an individual particle can be modulated based on these interactions. Furthermore, this analysis yielded the very first sub nanometer structure for any paramyxovirus M protein lattice and describes a novel structural arrangement of the M oligomeric assembly. These results provide the first explanation for paramyxovirus pleomorphism and provide valuable structural insights into the assembly of Nipah virus.

Description
211 pages
Date Issued
2025-05
Committee Chair
Aguilar-Carreno, Hector
Committee Member
Whittaker, Gary
Parrish, Colin
Collins, Ruth
Degree Discipline
Biomedical and Biological Sciences
Degree Name
Ph. D., Biomedical and Biological Sciences
Degree Level
Doctor of Philosophy
Rights
Attribution-NoDerivatives 4.0 International
Rights URI
https://creativecommons.org/licenses/by-nd/4.0/
Type
dissertation or thesis
Link(s) to Catalog Record
https://newcatalog.library.cornell.edu/catalog/16938197

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