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  4. Development Of Dna Aptamers By Cell-Selex Using Yeast Cell Surface Display

Development Of Dna Aptamers By Cell-Selex Using Yeast Cell Surface Display

File(s)
hm296.pdf (3.04 MB)
Permanent Link(s)
https://hdl.handle.net/1813/36083
Collections
Cornell Theses and Dissertations
Author
Meng, Hsien-Wei
Abstract

SELEX, the process of selecting aptamers, is often hampered by the difficulty of preparing target molecules in their native forms and by a lack of a simple yet quantitative assay for monitoring enrichment and affinity of reactive aptamers. In this study, I established a new method to seek to discover DNA aptamers against human serum markers for potential therapeutic and diagnostic applications. To circumvent soluble expression and immobilization for performing SELEX, I ectopically expressed soluble growth factors on the surface of yeast cells to enable cell-SELEX and devised a flow cytometry-based method to quantitatively monitor progressive enrichment of specific aptamers. High-throughput sequencing of selected pools revealed that the emergence of highly enriched sequences concurred with the increase in the percentage of reactive aptamers shown by flow cytometry. I first tested if the yeast-surface display works as a platform for examining bindings of aptamers to target proteins. Afterwards, I particularly selected DNA aptamers against VEGF were specific and of high affinity (KD = ~ 1 nM), and demonstrated a potent inhibition of capillary tube formation of endothelial cells, comparable to the effect of a clinically approved antiVEGF antibody drug, bevacizumab. I also have successfully selected DNA aptamers i against PDGF-A, PDGF-B. Considering the fact that many mammalian secretory proteins have been functionally expressed in yeast, the strategy of implementing cellSELEX and quantitative binding assay can be extended to discover aptamers against a broad array of soluble antigens.

Date Issued
2014-01-27
Keywords
Aptamer
•
Cell-SELEX
•
Yeast Surface Display
Committee Chair
Jin, Moonsoo
Committee Member
Coonrod, Scott A.
Lis, John T
Sondermann, Holger
Degree Discipline
Veterinary Medicine
Degree Name
Ph. D., Veterinary Medicine
Degree Level
Doctor of Philosophy
Type
dissertation or thesis

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