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  4. EXPLORING EPISODIC ASSOCIATIVE NITROGEN FIXATION IN THE SWITCHGRASS RHIZOSPHERE THROUGH MULTISUBSTRATE DNA STABLE ISOTOPE PROBING WITH 13CO2 & 15N2

EXPLORING EPISODIC ASSOCIATIVE NITROGEN FIXATION IN THE SWITCHGRASS RHIZOSPHERE THROUGH MULTISUBSTRATE DNA STABLE ISOTOPE PROBING WITH 13CO2 & 15N2

File(s)
Murphy_cornellgrad_0058F_15216.pdf (20.44 MB)
Permanent Link(s)
https://doi.org/10.7298/k9z3-ms19
https://hdl.handle.net/1813/120822
Collections
Cornell Theses and Dissertations
Author
Murphy, Sean
Abstract

Biological nitrogen fixation offers a practical route to reduce reliance on synthetic fertilizers, and associative nitrogen fixation (ANF) may potentially satisfy a meaningful share of the nitrogen demand of many non-leguminous plants. We investigated the coupling of plant-derived carbon inputs to nitrogen fixation in the rhizosphere of switchgrass, an important bioenergy crop, by conducting multisubstrate DNA stable isotope probing using whole-plant mesocosms labeled with either ¹³CO₂ or ¹⁵N₂. In total, 772 taxa were labeled, including 365 that were ¹³C-labeled, 192 that were uniquely ¹⁵N-labeled, and 215 that were dual ¹³C- and ¹⁵N-labeled. These OTUs represented ~14.9% of the rhizosphere community. The pattern of isotope incorporation is consistent with multiple routes of fixation, driven by provisioning from plant photosynthate, and followed by rapid turnover and mineralization of N from microbial biomass. We also detect dual labeling in taxa typically associated with cyanobacterial or bryophyte-mediated soil crusts, suggesting that biocrust communities might establish on the soil surface below switchgrass plants. The data indicate that ANF in switchgrass is a community process driven by habitat conditions promoted by the host plant.

Description
221 pages
Date Issued
2025-08
Keywords
Associative Nitrogen Fixation
•
Microbial Ecology
•
Microbiology
•
Plant-Microbe Interactions
•
Stable Isotope Probing
•
Switchgrass
Committee Chair
Buckley, Daniel
Committee Member
Yavitt, Joseph
Zinder, Stephen
Degree Discipline
Microbiology
Degree Name
Ph. D., Microbiology
Degree Level
Doctor of Philosophy
Rights
Attribution 4.0 International
Rights URI
https://creativecommons.org/licenses/by/4.0/
Type
dissertation or thesis

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