Table S2.7 Table S2.7. List of expressed genes in the W region Gene IDs1 RPKM-Standard samples RPKM-Weeping samples Fold Change (original values) Baggerley's test: P-value Baggerley's test: FDR p-value correction Description by Mapman Chromosomal location M928608 54.9 6.8 -8.1 1.95E-09 5.54E-07 35.2_not assigned.unknown_ glucuronoxylan 4-O-methyltransferase 2-like moderately similar to ( 310) AT1G67330 | Symbols: | unknown protein | chr1:25214118-25214993 FORWARDmoderately similar to ( 238) loc_os11g29780 12011.m06887 protein plant-specific domain TIGR01627 family protein, expressed no original description =LOC103452152: glucuronoxylan 4-O-methyltransferase 2-like (LOC103452152), transcript variant X2, mRNA. chr13_8324364_8325212-_MDC002436.463 M534197 98.0 30.9 -3.2 2.66E-08 6.42E-06 35.2_not assigned.unknown_ glucuronoxylan 4-O-methyltransferase 2-like moderately similar to ( 309) AT1G67330 | Symbols: | unknown protein | chr1:25214118-25214993 FORWARDmoderately similar to ( 235) loc_os11g29780 12011.m06887 protein plant-specific domain TIGR01627 family protein, expressed no original description =LOC103452153: glucuronoxylan 4-O-methyltransferase 2-like (LOC103452153), mRNA. chr13_8340268_8341116+_MDC000565.204 M160372 101.8 46.7 -2.2 4.33E-05 5.60E-03 35.1_not assigned.no ontology_ moderately similar to ( 210) AT1G67360 | Symbols: | rubber elongation factor (REF) family protein | chr1:25237072-25237913 REVERSEvery weakly similar to (99.8) Y5940_ORYSA Putative REF/SRPP-like protein Os05g0151300 - Oryza sativa (Rice)weakly similar to ( 103) loc_os07g47510 12007.m079784 protein stress-related protein, putative, expressed no original description chr13_8226278_8227987+_MDC000402.360 G100139 6.4 2.2 -3.0 0.105 1 35.1_not assigned.no ontology_(at1g67350 : 137.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (loc_os03g48110.1 : 111.0) no description available & (gnl|cdd|38301 : 55.4) no description available & (reliability: 274.0) & (original description: no original description) chr13_8188961..8244343_MDC000402.360 G202624 2.0 1.9 -1.1 0.984 1 29.3.2_protein.targeting.mitochondria_(p92792|tom20_soltu : 99.8) Mitochondrial import receptor subunit TOM20 (Translocase of outer membrane 20 kDa subunit) - Solanum tuberosum (Potato) & (ipr010547 : 85.59612) Plant specific mitochondrial import receptor subunit TOM20 & (at3g27080 : 79.7) Component of the TOM complex involved in transport of nuclear-encoded mitochondrial proteins; translocase of outer membrane 20 kDa subunit 3 (TOM20-3); CONTAINS InterPro DOMAIN/s: Plant specific mitochondrial import receptor subunit TOM20 (InterPro:IPR010547); BEST Arabidopsis thaliana protein match is: translocase outer membrane 20-1 (TAIR:AT3G27070.1); Has 97 Blast hits to 97 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (loc_os01g69250.1 : 71.2) no description available & (chl4|513572 : 52.4) no description available & (reliability: 159.4) & (original description: no original description) chr13_8192455..8194513_MDC009999.103 M449345 3.0 3.3 1.1 0.803 1 26.1_misc.cytochrome P450_ moderately similar to ( 483) AT1G74110 | Symbols: CYP78A10 | CYP78A10; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding | chr1:27866667-27868368 REVERSEmoderately similar to ( 459) C78A3_SOYBN Cytochrome P450 78A3 (EC 1.14.-.-) - Glycine max (Soybean)moderately similar to ( 498) loc_os11g29720 12011.m06881 protein cytochrome P450 78A4, putative, expressed PRK08026 MSP1_C no original description chr13_8192597_8205319+_MDC000402.360 M344682 1.5 4.6 3.2 0.176 1 29.3.2_protein.targeting.mitochondria_ very weakly similar to (61.2) AT1G27390 | Symbols: TOM20-2 | TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2); P-P-bond-hydrolysis-driven protein transmembrane transporter/ metal ion binding | chr1:9513469-9514912 REVERSEvery weakly similar to (73.6) TOM20_SOLTU Mitochondrial import receptor subunit TOM20 (Translocase of outer membrane 20 kDa subunit) - Solanum tuberosum (Potato)very weakly similar to (56.6) loc_os01g69250 12001.m43529 protein mitochondrial import receptor subunit TOM20, putative, expressed no original description chr13_8194398_8194604-_MDC000402.360 M266550 1.4 2.4 1.8 0.547 1 27.3.67_RNA.regulation of transcription.putative transcription regulator_ highly similar to ( 684) AT1G67370 | Symbols: ASY1, ATASY1 | ASY1 (ASYNAPTIC 1); DNA binding | chr1:25239347-25243713 REVERSEhighly similar to ( 539) loc_os09g32930 12009.m22009 protein retrotransposon protein, putative, SINE subclass, expressed no original description chr13_8215135_8225099+_MDC000402.360 M449352 6.6 10.5 1.6 5.67E-04 1 27.3.99_RNA.regulation of transcription.unclassified_ moderately similar to ( 418) AT1G67340 | Symbols: | zinc finger (MYND type) family protein / F-box family protein | chr1:25230323-25231622 FORWARDmoderately similar to ( 355) loc_os01g69270 12001.m13027 protein MYND finger family protein, expressed no original description chr13_8235117_8236588-_MDC000402.360 M329927 76.6 73.7 -1.0 0.794 1 29.6_protein.folding_ weakly similar to ( 140) AT5G43260 | Symbols: | chaperone protein dnaJ-related | chr5:17357693-17357986 REVERSEvery weakly similar to (70.9) loc_os02g30320 12002.m08175 protein drought-induced protein 1, putative, expressed no original description chr13_8265899_8266286+_MDC021754.182 M309014 55.0 34.6 -1.6 0.206 1 1.1.1.1_PS.lightreaction.photosystem II.LHC-II_ moderately similar to ( 448) AT3G61470 | Symbols: LHCA2 | LHCA2; chlorophyll binding | chr3:22745736-22747032 FORWARDmoderately similar to ( 460) CB12_PETHY Chlorophyll a-b binding protein, chloroplast precursor (LHCI type II CAB) - Petunia hybrida (Petunia)moderately similar to ( 430) loc_os07g38960 12007.m29236 protein chlorophyll a-b binding protein, chloroplast precursor, putative, expressed no original description chr13_8265920_8269493-_MDC021754.182 M906779 1.7 0.4 -4.1 0.396 1 29.5.11.1_protein.degradation.ubiquitin.ubiquitin_ moderately similar to ( 253) AT2G47110 | Symbols: UBQ6 | UBQ6; protein binding | chr2:19344701-19345174 FORWARDweakly similar to ( 150) UBIQ_WHEAT Ubiquitin - Triticum aestivum (Wheat)moderately similar to ( 246) loc_os01g22490 12001.m08729 protein 40S ribosomal protein S27a, putative, expressed no original description chr13_8303145_8303615-_MDC008620.337 M730072 2.6 1.5 -1.7 0.642 1 35.2_not assigned.unknown_ weakly similar to ( 195) AT1G27385 | Symbols: | unknown protein | chr1:9510475-9512820 REVERSEmoderately similar to ( 341) loc_os11g29630 12011.m06872 protein expressed protein no original description chr13_8304508_8310975-_MDC008620.337 M287764 4.5 4.9 1.1 0.8 1 28.99_DNA.unspecified_ moderately similar to ( 391) AT1G11780 | Symbols: | oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr1:3977614-3979177 REVERSEweakly similar to ( 176) loc_os11g29690 12011.m06878 protein alkylated DNA repair protein alkB, putative, expressed no original description chr13_8311290_8313466+_MDC008620.337 G100202 8.0 2.8 -2.8 0.017 1 35.2_not assigned.unknown_(gnl|cdd|38301 : 59.6) no description available & (gnl|cdd|33678 : 50.8) no description available & (reliability: 100.0) & (original description: no original description) chr13_8351163..8450281_MDC000565.206 M155345 2.8 2.6 -1.1 0.973 1 27.3.39_RNA.regulation of transcription.AtSR Transcription Factor family_ highly similar to ( 525) AT1G67310 | Symbols: | calmodulin binding / transcription regulator | chr1:25198182-25203126 REVERSEvery weakly similar to (50.4) TBB_HORVU Tubulin beta chain (Beta tubulin) - Hordeum vulgare (Barley)moderately similar to ( 415) loc_os04g31900 12004.m08289 protein calmodulin-binding transcription activator 4, putative, expressed no original description chr13_8371256_8375565+_MDC000565.206 M262802 9.6 6.2 -1.6 0.347 1 35.2_not assigned.unknown_ very weakly similar to (65.9) AT1G27300 | Symbols: | unknown protein | chr1:9483324-9484194 FORWARDvery weakly similar to (54.7) loc_os02g30610 12002.m08204 protein expressed protein no original description chr13_8378346_8379402+_MDC000565.206 M155347 9.6 5.0 -1.9 0.145 1 17.4.2_hormone metabolism.cytokinin.signal transduction_ nearly identical (1329) AT1G27320 | Symbols: AHK3 | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3); cytokinin receptor/ osmosensor/ protein histidine kinase | chr1:9487780-9492027 FORWARDweakly similar to ( 139) NTF2_ORYSA Nuclear transport factor 2 (NTF-2) - Oryza sativa (Rice)nearly identical (1126) loc_os01g69920 12001.m42798 protein histidine kinase 2, putative, expressed no original description chr13_8381572_8389769-_MDC000565.206 M262805 5.2 5.4 1.0 0.855 1 20.2.1_stress.abiotic.heat_ highly similar to ( 502) AT2G25560 | Symbols: | DNAJ heat shock N-terminal domain-containing protein | chr2:10881790-10883760 FORWARDvery weakly similar to (52.8) DNJH_CUCSA DnaJ protein homolog (DNAJ-1) - Cucumis sativus (Cucumber)highly similar to ( 602) loc_os04g31940 12004.m08293 protein heat shock protein binding protein, putative, expressed no original description chr13_8401044_8403302+_MDC000565.206 M155349 40.7 28.0 -1.5 0.227 1 34.2_transport.sugars_ weakly similar to ( 125) AT1G27330 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosome associated membrane RAMP4 (InterPro:IPR010580); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27350.1); Has 267 Blast hits to 267 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 183; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink). | chr1:9493064-9493898 FORWARDweakly similar to ( 120) loc_os12g32950 12012.m07093 protein membrane protein, putative, expressed no original description chr13_8404649_8406000+_MDC000565.206 M155354 15.2 16.0 1.1 0.714 1 27.3.28_RNA.regulation of transcription.SBP,Squamosa promoter binding protein family_ moderately similar to ( 239) AT5G43270 | Symbols: SPL2 | SPL2 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2); DNA binding / transcription factor | chr5:17360527-17362143 REVERSEweakly similar to ( 112) LG1_MAIZE LIGULELESS1 protein - Zea mays (Maize)moderately similar to ( 241) loc_os06g49010 12006.m091569 protein squamosa promoter-binding-like protein 11, putative, expressed no original description chr13_8433237_8436223+_MDC000565.206 M262811 30.3 17.3 -1.8 0.133 1 26.21_misc.protease inhibitor/seed storage/lipid transfer protein (LTP) family protein_ moderately similar to ( 295) AT1G67325 | Symbols: | binding / zinc ion binding | chr1:25209825-25212412 REVERSEweakly similar to ( 121) HS22M_SOYBN Heat shock 22 kDa protein, mitochondrial precursor - Glycine max (Soybean)moderately similar to ( 222) loc_os08g41010 12008.m26752 protein Zn-finger, RanBP-type, containing protein, expressed no original description chr13_8437323_8446041-_MDC000565.206 M033458 9.5 6.6 -1.4 0.582 1 35.2_not assigned.unknown_ weakly similar to ( 140) AT3G27030 | Symbols: | unknown protein | chr3:9972508-9974225 REVERSEvery weakly similar to (93.2) loc_os02g30470 12002.m100772 protein expressed protein no original description chr13_8444035_8447179+_MDC000015.172 M936232 0.4 2.3 5.1 0.254 1 27.3.24_RNA.regulation of transcription.MADS box transcription factor family_ weakly similar to ( 191) AT1G24260 | Symbols: SEP3, AGL9 | SEP3 (SEPALLATA3); DNA binding / protein binding / transcription factor | chr1:8593790-8595862 REVERSEmoderately similar to ( 230) AGL9_PETHY Agamous-like MADS-box protein AGL9 homolog (Floral homeotic protein FBP2) (Floral-binding protein 2) - Petunia hybrida (Petunia)weakly similar to ( 137) loc_os09g32948 12009.m06382 protein MADS-box transcription factor 8, putative, expressed no original description chr13_8456763_8458365+_MDC007633.166 M177248 2.8 3.9 1.4 0.579 1 29.4_protein.postranslational modification_ moderately similar to ( 402) AT3G20860 | Symbols: ATNEK5 | ATNEK5 (NIMA-RELATED KINASE5); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase | chr3:7306147-7308434 FORWARDvery weakly similar to (86.3) M2K1_ORYSA Mitogen-activated protein kinase kinase 1 (EC 2.7.12.2) (MAP kinase kinase 1) (MAPKK1) (OsMEK1) - Oryza sativa (Rice)moderately similar to ( 375) loc_os02g37830 12002.m100648 protein serine/threonine-protein kinase Nek4, putative, expressed no original description chr13_8458169_8463454-_MDC007539.71 M249462 5.4 3.9 -1.4 0.71 1 35.2_not assigned.unknown_ weakly similar to ( 145) AT1G27290 | Symbols: | unknown protein | chr1:9481788-9482576 FORWARDvery weakly similar to (87.0) loc_os09g32960 12009.m22159 protein expressed protein no original description chr13_8463525_8465378+_MDC007633.166 M792088 1.5 0.8 -1.8 0.714 1 27.3.32_RNA.regulation of transcription.WRKY domain transcription factor family_ weakly similar to ( 162) AT5G13080 | Symbols: WRKY75, ATWRKY75 | WRKY75; transcription factor | chr5:4149928-4151019 REVERSEweakly similar to ( 168) loc_os11g29870 12011.m06896 protein OsWRKY72 - Superfamily of rice TFs having WRKY and zinc finger domains, expressed no original description chr13_8495422_8497092+_MDC018107.153 M141115 3.5 2.8 -1.2 0.872 1 35.2_not assigned.unknown_ weakly similar to ( 167) AT1G24267 | Symbols: | unknown protein | chr1:8604451-8607241 REVERSEweakly similar to ( 111) loc_os01g01070 12001.m06754 protein expressed protein no original description chr13_8501723_8506921+_MDC018107.153 M141116 2.3 2.4 1.0 0.922 1 28.1_DNA.synthesis/chromatin structure_ highly similar to ( 614) AT1G67320 | Symbols: | DNA primase, large subunit family | chr1:25205520-25208966 REVERSEhighly similar to ( 635) loc_os07g22400 12007.m079652 protein DNA primase large subunit, putative, expressed no original description chr13_8507989_8515589+_MDC018107.153 M143661 2.1 2.4 1.2 0.804 1 11.8.1_lipid metabolism.'exotics' (steroids, squalene etc).sphingolipids_ highly similar to ( 857) AT1G27980 | Symbols: DPL1, ATDPL1 | DPL1; carboxy-lyase/ catalytic/ pyridoxal phosphate binding | chr1:9748812-9752618 FORWARDhighly similar to ( 804) SGPL_ORYSA Sphingosine-1-phosphate lyase precursor (EC 4.1.2.27) (SP-lyase) (SPL) (Sphingosine-1-phosphate aldolase) - Oryza sativa (Rice)highly similar to ( 813) loc_os01g01080 12001.m150454 protein sphingosine-1-phosphate lyase, putative, expressed no original description chr13_8551278_8555409+_MDC027667.11 M254069 3.3 2.5 -1.3 0.823 1 35.2_not assigned.unknown_ LAZY1 like_weakly similar to ( 143) AT5G14090 | Symbols: | unknown protein | chr5:4547230-4549214 FORWARDvery weakly similar to (65.5) loc_os11g29840 12011.m06893 protein expressed protein no original description chr13_8556287_8569904-_MDC027667.11 M235206 1.2 1.0 -1.2 0.927 1 35.1_not assigned.no ontology_ moderately similar to ( 475) AT1G69040 | Symbols: ACR4 | ACR4 (ACT REPEAT 4); amino acid binding | chr1:25957843-25960079 FORWARDmoderately similar to ( 473) loc_os03g29980 12003.m34884 protein ACR4, putative, expressed no original description chr13_8612469_8619420-_MDC000204.221 M374900 9.1 4.6 -2.0 0.267 1 27.3.29_RNA.regulation of transcription.TCP transcription factor family_ moderately similar to ( 201) AT3G27010 | Symbols: AT-TCP20, PCF1, TCP20 | AT-TCP20; transcription factor | chr3:9957810-9958754 REVERSEweakly similar to ( 156) loc_os01g69980 12001.m43355 protein TCP-domain protein, putative, expressed no original description chr13_8629824_8630576-_MDC000204.221 M344830 6.1 6.3 1.0 0.847 1 35.2_not assigned.unknown_ no original description chr13_8635300_8635429-_MDC000204.221 M881201 3.1 7.0 2.2 0.254 1 35.2_not assigned.unknown_ very weakly similar to (53.1) loc_os12g27440 12012.m06561 protein expressed protein PRK07003 PRK07735 TrbL no original description chr13_8652387_8653151-_MDC000204.221 M323066 38.6 45.6 1.2 0.259 1 31.3.1_cell.cycle.peptidylprolyl isomerase_ very weakly similar to (89.7) AT5G13120 | Symbols: | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein | chr5:4162714-4164720 REVERSEvery weakly similar to (67.8) CYPB_VICFA Peptidyl-prolyl cis-trans isomerase, chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-binding protein) (CYP B) - Vicia faba (Broad bean)very weakly similar to (94.0) loc_os05g01270 12005.m04668 protein peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed no original description chr13_8659553_8659703-_MDC004046.116 M143560 1.6 2.2 1.4 0.7 1 35.1_not assigned.no ontology_ highly similar to ( 732) AT1G24300 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: GYF domain-containing protein (TAIR:AT1G27430.1); Has 21766 Blast hits to 10819 proteins in 514 species: Archae - 0; Bacteria - 738; Metazoa - 8216; Fungi - 1952; Plants - 1070; Viruses - 89; Other Eukaryotes - 9701 (source: NCBI BLink). | chr1:8614515-8620420 REVERSEmoderately similar to ( 352) loc_os01g69990 12001.m13048 protein GYF domain containing protein, expressed no original description chr13_8659783_8666712+_MDC021176.83 M253995 15.3 15.5 1.0 0.79 1 31.3.1_cell.cycle.peptidylprolyl isomerase_ moderately similar to ( 251) AT5G13120 | Symbols: | peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein | chr5:4162714-4164720 REVERSEmoderately similar to ( 201) CYPB_VICFA Peptidyl-prolyl cis-trans isomerase, chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-binding protein) (CYP B) - Vicia faba (Broad bean)moderately similar to ( 254) loc_os05g01270 12005.m04668 protein peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed no original description chr13_8667474_8669985+_MDC021176.83 M153978 0.9 14.2 15.6 1.38E-03 0.051 33.99_development.unspecified_ very weakly similar to (92.8) AT1G12060 | Symbols: ATBAG5 | ATBAG5 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 5); protein binding | chr1:4076334-4077024 FORWARDvery weakly similar to (87.4) loc_os11g31060 12011.m07011 protein BAG domain containing protein, expressed no original description chr13_8675928_8677484+_MDC018786.82 M432422 2.5 3.7 1.5 0.566 1 21.4_redox.glutaredoxins_ weakly similar to ( 157) AT3G02000 | Symbols: ROXY1 | ROXY1; disulfide oxidoreductase | chr3:332512-332922 REVERSEvery weakly similar to (80.1) GLRX_RICCO Glutaredoxin - Ricinus communis (Castor bean)weakly similar to ( 176) loc_os04g32300 12004.m08328 protein OsGrx_C9 - glutaredoxin subgroup III no original description chr13_8724220_8726812+_MDC010580.222 M185978 1.1 2.6 2.4 0.39 1 35.1_not assigned.no ontology_ highly similar to ( 674) AT5G50780 | Symbols: | ATP binding | chr5:20650269-20654948 FORWARDhighly similar to ( 599) loc_os02g27000 12002.m07844 protein ATP binding protein, putative, expressed no original description chr13_8733200_8738961-_MDC010580.222 M691261 5.3 15.6 2.9 0.1 0.795 29.4.1.57_protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII_ highly similar to ( 689) AT5G13160 | Symbols: PBS1 | PBS1 (avrPphB susceptible 1); kinase/ protein serine/threonine kinase | chr5:4176854-4179682 FORWARDmoderately similar to ( 240) NORK_PEA Nodulation receptor kinase precursor (EC 2.7.11.1) - Pisum sativum (Garden pea)highly similar to ( 615) loc_os02g30900 12002.m08233 protein protein kinase APK1A, chloroplast precursor, putative, expressed TrbL no original description chr13_8744814_8747953-_MDC007678.302 M691266 0.0 1.5 ꝏ 0.215 1 31.4_cell.vesicle transport_ highly similar to ( 575) AT5G13150 | Symbols: ATEXO70C1 | ATEXO70C1 (exocyst subunit EXO70 family protein C1); protein binding | chr5:4172969-4174930 REVERSEmoderately similar to ( 454) loc_os11g06700 12011.m04867 protein protein binding protein, putative, expressed no original description chr13_8760944_8762854+_MDC007678.302 M233842 22.0 11.9 -1.8 0.479 1 13.2.6.3_amino acid metabolism.degradation.aromatic aa.tryptophan_ moderately similar to ( 403) AT5G43280 | Symbols: ATDCI1 | ATDCI1 (DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1); delta3,5-delta2,4-dienoyl-CoA isomerase/ enoyl-CoA hydratase | chr5:17367947-17368750 FORWARDvery weakly similar to (83.6) MFPA_CUCSA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Includes: Enoyl-CoA hydratase (EC 4.2.1.17); 3-2-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3); 3-hydroxyacyl-CoA dehydrogenase (moderately similar to ( 300) loc_os01g70090 12001.m13057 protein delta3,5-delta2,4-dienoyl-CoA isomerase, mitochondrial precursor, putative, expressed no original description chr13_8772012_8773062+_MDC012567.297 M126517 24.7 15.1 -1.6 0.202 1 33.99_development.unspecified_ moderately similar to ( 293) AT5G13180 | Symbols: ANAC083 | ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83); transcription factor | chr5:4196643-4197577 FORWARDweakly similar to ( 184) NAC68_ORYSA NAC domain-containing protein 68 (ONAC068) - Oryza sativa (Rice)weakly similar to ( 189) loc_os07g37920 12007.m08041 protein NAM-like protein, putative, expressed no original description chr13_8799925_8801262-_MDC011748.174 M146411 12.2 16.0 1.3 0.356 1 8.1.1.1_TCA / org transformation.TCA.pyruvate DH.E1_ highly similar to ( 613) AT5G50850 | Symbols: MAB1 | MAB1 (MACCI-BOU); catalytic/ pyruvate dehydrogenase (acetyl-transferring) | chr5:20689671-20692976 FORWARDhighly similar to ( 606) ODPB_PEA Pyruvate dehydrogenase E1 component subunit beta, mitochondrial precursor (EC 1.2.4.1) (PDHE1-B) - Pisum sativum (Garden pea)highly similar to ( 641) loc_os08g42410 12008.m080219 protein pyruvate dehydrogenase E1 component subunit beta, mitochondrial precursor, putative, expressed no original description chr13_8804346_8808435-_MDC001446.131 M146412 11.5 5.6 -2.1 0.284 1 35.2_not assigned.unknown_ very weakly similar to (88.6) AT1G27435 | Symbols: | unknown protein | chr1:9527956-9528814 REVERSE no original description chr13_8817060_8818217+_MDC001446.131 M331536 2.2 3.1 1.4 0.626 1 30.2.11_signalling.receptor kinases.leucine rich repeat XI_ moderately similar to ( 280) AT5G21090 | Symbols: | leucine-rich repeat protein, putative | chr5:7164758-7166904 FORWARDweakly similar to ( 101) RPK1_IPONI Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil)moderately similar to ( 282) loc_os01g59440 12001.m43236 protein BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed no original description chr13_8829193_8831016+_MDC022366.55 M154972 1.5 5.7 3.8 0.184 1 27.3.67_RNA.regulation of transcription.putative transcription regulator_ moderately similar to ( 469) AT2G33490 | Symbols: | hydroxyproline-rich glycoprotein family protein | chr2:14183552-14187666 FORWARDmoderately similar to ( 354) loc_os04g32370 12004.m08335 protein expressed protein Sporozoite_P67 no original description chr13_8832523_8837044-_MDC022366.55 M302297 2.4 1.6 -1.5 0.759 1 30.2.11_signalling.receptor kinases.leucine rich repeat XI_ moderately similar to ( 205) AT1G71830 | Symbols: SERK1, ATSERK1 | SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1); kinase/ transmembrane receptor protein serine/threonine kinase | chr1:27018575-27021842 FORWARDweakly similar to ( 108) RPK1_IPONI Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil)weakly similar to ( 199) loc_os08g07760 12008.m04913 protein BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed MSP1_C no original description chr13_8847122_8862470+_MDC016091.69 M365927 10.7 14.9 1.4 0.309 1 35.2_not assigned.unknown_ weakly similar to ( 182) AT5G13190 | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 21 Blast hits to 21 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:4204987-4206205 REVERSEweakly similar to ( 159) loc_os02g31100 12002.m08253 protein LITAF-domain-containing protein, putative, expressed no original description chr13_8899035_8899937-_MDC011475.284 M126976 2.0 3.5 1.7 0.469 1 35.2_not assigned.unknown_ weakly similar to ( 148) AT2G33510 | Symbols: | protein binding | chr2:14194195-14195473 FORWARDvery weakly similar to (92.0) loc_os02g31140 12002.m08257 protein major ampullate spidroin 2-2, putative, expressed no original description chr13_8903932_8905443-_MDC012346.135 G103876 1.3 0.0 _ꝏ 0.252 1 35.2_not assigned.unknown_ no hits & (original description: no original description) chr13_8907689..8949969_MDC010752.201 M166893 1.1 1.3 1.2 0.852 1 16.4.1_secondary metabolism.N misc.alkaloid-like_ very weakly similar to (89.7) AT3G57030 | Symbols: | strictosidine synthase family protein | chr3:21101653-21103204 REVERSEvery weakly similar to (55.5) STSY_CATRO Strictosidine synthase precursor (EC 4.3.3.2) - Catharanthus roseus (Rosy periwinkle) (Madagascar periwinkle)very weakly similar to (76.6) loc_os12g04424 12012.m56468 protein strictosidine synthase 3 precursor, putative, expressed no original description chr13_8994098_8994562+_MDC005708.222 M345078 4.2 5.3 1.3 0.619 1 35.2_not assigned.unknown_ very weakly similar to (82.8) AT1G26180 | Symbols: | unknown protein | chr1:9054824-9056526 FORWARDvery weakly similar to (89.4) loc_os02g22060 12002.m07444 protein membrane protein, putative, expressed no original description chr13_9002963_9003200-_MDC016323.234 M208152 24.8 33.1 1.3 0.167 1 26.12_misc.peroxidases_ moderately similar to ( 422) AT5G06720 | Symbols: | peroxidase, putative | chr5:2077567-2078857 REVERSEmoderately similar to ( 368) PERX_TOBAC Lignin-forming anionic peroxidase precursor (EC 1.11.1.7) (TOPA) - Nicotiana tabacum (Common tobacco)moderately similar to ( 381) loc_os03g13200 12003.m06766 protein peroxidase 53 precursor, putative, expressed no original description chr13_9042298_9044661-_MDC015646.190 M597190 1.3 1.3 -1.0 0.979 1 35.2_not assigned.unknown_ moderately similar to ( 338) AT3G12060 | Symbols: | unknown protein | chr3:3843142-3845150 FORWARDmoderately similar to ( 357) loc_os06g10560 12006.m05774 protein expressed protein no original description chr13_9043918_9045841+_MDC003533.382 G104991 3.9 4.4 1.1 0.776 1 29.5.11.4.3.2_protein.degradation.ubiquitin.E3.SCF.FBOX_(at1g57790 : 57.8) F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G56470.1); Has 543 Blast hits to 532 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 541; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). & (loc_os12g23460.1 : 51.2) no description available & (gnl|cdd|38301 : 50.4) no description available & (reliability: 115.6) & (original description: no original description) chr13_9053168..9065707_MDC013517.265 M722369 10.9 11.1 1.0 0.817 1 25_C1-metabolism_ nearly identical (1056) AT1G50480 | Symbols: THFS | THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE); ATP binding / copper ion binding / formate-tetrahydrofolate ligase | chr1:18702064-18704687 FORWARDnearly identical (1063) FTHS_SPIOL Formate--tetrahydrofolate ligase (EC 6.3.4.3) (Formyltetrahydrofolate synthetase) (10-formyletrahydrofolate synthetase) (FHS) (FTHFS) - Spinacia oleracea (Spinach)nearly identical (1032) loc_os09g27420 12009.m059990 protein formate--tetrahydrofolate ligase, putative, expressed no original description chr13_9054543_9058414+_MDC018022.56 M604460 1.8 2.9 1.6 0.548 1 25_C1-metabolism_ nearly identical (1056) AT1G50480 | Symbols: THFS | THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE); ATP binding / copper ion binding / formate-tetrahydrofolate ligase | chr1:18702064-18704687 FORWARDnearly identical (1063) FTHS_SPIOL Formate--tetrahydrofolate ligase (EC 6.3.4.3) (Formyltetrahydrofolate synthetase) (10-formyletrahydrofolate synthetase) (FHS) (FTHFS) - Spinacia oleracea (Spinach)nearly identical (1032) loc_os09g27420 12009.m059990 protein formate--tetrahydrofolate ligase, putative, expressed no original description chr13_9054801_9058670-_MDC013517.265 G106903 2.6 1.4 -1.8 0.603 1 35.2_not assigned.unknown_(at4g10620 : 129.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G57180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (loc_os09g19980.1 : 124.0) no description available & (chl4|524247 : 59.7) no description available & (reliability: 258.0) & (original description: no original description) chr13_9064439..9066976_MDC020073.286 G106904 4.8 4.5 -1.1 0.991 1 35.2_not assigned.unknown_(gnl|cdd|36433 : 53.9) no description available & (reliability: 100.0) & (original description: no original description) chr13_9064439..9066976_MDC020073.286 M484601 2.2 2.8 1.3 0.729 1 33.99_development.unspecified_ highly similar to ( 565) AT4G10620 | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: GTP binding (TAIR:AT3G57180.1); Has 777 Blast hits to 699 proteins in 334 species: Archae - 15; Bacteria - 397; Metazoa - 157; Fungi - 74; Plants - 61; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). | chr4:6564297-6566402 FORWARDweakly similar to ( 149) SINAL_DROME Probable E3 ubiquitin-protein ligase sina-like CG13030 (EC 6.3.2.-) - Drosophila melanogaster (Fruit fly)moderately similar to ( 416) loc_os09g19980 12009.m05205 protein expressed protein no original description chr13_9071386_9077066+_MDC020073.271 G107577 17.8 28.7 1.6 0.294 1 29.4_protein.postranslational modification_(at3g13670 : 142.0) Protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT2G25760.1); Has 17131 Blast hits to 17075 proteins in 1486 species: Archae - 12; Bacteria - 5943; Metazoa - 4767; Fungi - 1425; Plants - 2358; Viruses - 214; Other Eukaryotes - 2412 (source: NCBI BLink). & (loc_os05g11140.1 : 132.0) no description available & (chl4|516367 : 96.7) no description available & (gnl|cdd|38301 : 50.8) no description available & (reliability: 284.0) & (original description: no original description) chr13_9097558..9106967_MDC022376.75 M310001 0.5 2.5 5.2 0.225 1 34.1_transport.p- and v-ATPases_ nearly identical (1800) AT1G68710 | Symbols: | haloacid dehalogenase-like hydrolase family protein | chr1:25793498-25797975 REVERSEvery weakly similar to (65.9) ACA1_ORYSA Calcium-transporting ATPase 1, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope ATPase 1) - Oryza sativa (Rice)nearly identical (1553) loc_os06g29380 12006.m07482 protein phospholipid-transporting ATPase 12, putative, expressed no original description chr13_9101492_9106311+_MDC022170.245 M819396 3.1 6.2 2.0 9.38E-03 1 34.12_transport.metal_ moderately similar to ( 275) AT3G58060 | Symbols: | cation efflux family protein / metal tolerance protein, putative (MTPc3) | chr3:21497778-21499676 REVERSEmoderately similar to ( 314) loc_os03g12530 12003.m06703 protein metal tolerance protein C3, putative, expressed no original description chr13_9105338_9106596-_MDC022376.75 M310003 8.5 9.4 1.1 0.696 1 29.4_protein.postranslational modification_ nearly identical (1011) AT3G13670 | Symbols: | protein kinase family protein | chr3:4469434-4473234 FORWARDhighly similar to ( 930) loc_os05g11140 12005.m083646 protein ATP binding protein, putative, expressed no original description chr13_9115866_9124878+_MDC022170.245 M310004 0.8 1.4 1.7 0.667 1 34.12_transport.metal_ moderately similar to ( 395) AT3G58060 | Symbols: | cation efflux family protein / metal tolerance protein, putative (MTPc3) | chr3:21497778-21499676 REVERSEmoderately similar to ( 435) loc_os03g12530 12003.m06703 protein metal tolerance protein C3, putative, expressed no original description chr13_9125488_9128629-_MDC022170.245 M138636 1.8 1.4 -1.3 0.898 1 34.7_transport.phosphate_ highly similar to ( 929) AT1G68740 | Symbols: | EXS family protein / ERD1/XPR1/SYG1 family protein | chr1:25812735-25816574 REVERSEhighly similar to ( 839) loc_os06g29790 12006.m07523 protein phosphate transporter 1, putative, expressed no original description chr13_9153941_9163160+_MDC011721.76 G100272 1.5 0.9 -1.7 0.724 1 35.2_not assigned.unknown_(gnl|cdd|38301 : 58.1) no description available & (gnl|cdd|76379 : 50.1) no description available & (reliability: 100.0) & (original description: no original description) chr13_9188336..9196184_MDC000767.440 M251234 2.3 3.6 1.6 0.523 1 27.3.46_RNA.regulation of transcription.DNA methyltransferases_ highly similar to ( 805) AT1G69770 | Symbols: CMT3 | CMT3 (chromomethylase 3); DNA (cytosine-5-)-methyltransferase | chr1:26248496-26253519 REVERSEhighly similar to ( 796) CMT1_MAIZE DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (Chromomethylase 1) (Zea methyltransferase2) (Zmet2) (DNA cytosine methyltransferase MET2a) - Zea mays (Maize)highly similar to ( 766) loc_os03g12570 12003.m06707 protein DNA cytosine methyltransferase MET2a, putative, expressed PRK08026 TrbL no original description chr13_9199256_9209757+_MDC010293.275 M584036 8.1 4.3 -1.9 0.171 1 35.2_not assigned.unknown_ very weakly similar to (77.0) AT2G20480 | Symbols: | unknown protein | chr2:8830715-8831496 REVERSE no original description chr13_9206866_9207298-_MDC010293.275 M139843 65.2 30.4 -2.1 0.074 0.109 35.2_not assigned.unknown_ weakly similar to ( 115) AT5G19875 | Symbols: | unknown protein | chr5:6718412-6718783 FORWARDweakly similar to ( 101) loc_os09g27330 12009.m05885 protein expressed protein no original description chr13_9213155_9213520-_MDC010293.275 M139844 8.2 6.9 -1.2 0.853 1 20.1.7_stress.biotic.PR-proteins_ weakly similar to ( 191) AT1G55210 | Symbols: | disease resistance response | chr1:20598057-20598620 REVERSEvery weakly similar to (57.8) DR206_PEA Disease resistance response protein 206 - Pisum sativum (Garden pea)weakly similar to ( 150) loc_os11g07830 12011.m04979 protein dirigent-like protein pDIR9, putative, expressed no original description chr13_9217932_9218513-_MDC010293.275 M838018 235.3 167.2 -1.4 0.104 0.511 20.1.7_stress.biotic.PR-proteins_ weakly similar to ( 191) AT1G55210 | Symbols: | disease resistance response | chr1:20598057-20598620 REVERSEvery weakly similar to (57.8) DR206_PEA Disease resistance response protein 206 - Pisum sativum (Garden pea)weakly similar to ( 150) loc_os11g07830 12011.m04979 protein dirigent-like protein pDIR9, putative, expressed no original description chr13_9218588_9219169-_MDC000767.435 M584042 5.5 4.6 -1.2 0.895 1 35.2_not assigned.unknown_ moderately similar to ( 363) AT1G55230 | Symbols: | unknown protein | chr1:20602895-20603797 FORWARDmoderately similar to ( 342) loc_os09g27260 12009.m05878 protein TMV response-related gene product, putative, expressed no original description chr13_9227292_9228242+_MDC010293.275 M449615 26.6 14.5 -1.8 0.063 1 35.2_not assigned.unknown_ moderately similar to ( 361) AT1G55230 | Symbols: | unknown protein | chr1:20602895-20603797 FORWARDmoderately similar to ( 332) loc_os09g27260 12009.m05878 protein TMV response-related gene product, putative, expressed MSP1_C no original description chr13_9239091_9240041+_MDC016751.274 M272085 1.0 1.1 1.2 0.859 1 35.2_not assigned.unknown_ moderately similar to ( 254) AT3G32940 | Symbols: | RNA binding | chr3:13491089-13493630 REVERSEmoderately similar to ( 227) loc_os08g01070 12008.m080054 protein transcription or splicing factor-like protein, putative, expressed COG3889 no original description chr13_9249065_9259368+_MDC003294.493 M177298 0.7 1.2 1.8 0.671 1 20.1.7_stress.biotic.PR-proteins_ very weakly similar to (73.6) AT3G14460 | Symbols: | disease resistance protein (NBS-LRR class), putative | chr3:4851990-4856264 REVERSE no original description chr13_9501094_9502287+_MDC007704.603 1 The prefix ‘MDP0000’ (e.g. MDP0000123456) in the original gene IDs is abbreviated to ‘M’ (e.g. M123456). Gene IDs in ‘G######s’ as in ‘G101234’ are for the novel transcripts reported in Bai et al (2014). DEG by both V1 (Velasco et al. 2010) and V2 (Daccord et al. 2017) apple reference genomes. DEG by V2. non-DEG, but a potential candidate gene by function