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dc.contributor.authorShapleigh, James P
dc.contributor.authorRoco, Armanda
dc.date.accessioned2018-07-31T18:53:03Z
dc.date.available2018-07-31T18:53:03Z
dc.date.issued2018
dc.identifier.urihttps://hdl.handle.net/1813/57594
dc.description.abstractThis is the protein sequence dataset used for determining reads derived from denitrification genes in Illumina read samples. The protein types in the dataset are the active site containing subunits from the following proteins: Nap – periplasmic nitrate reductase; Nar – membrane associated nitrate reductase; NirK – copper containing nitrite reductase; NirS- heme-containing nitrite reductase; cNor – cytochrome c oxidizing nitrite reductase; qNor – quinol oxidizing nitric oxide reductase and Nos – nitrous oxide reductase. Sequences were initially obtained from the data available from the Integrated Microbial Genomes (IMG) system (https://img.jgi.doe.gov/cgi-bin/m/main.cgi). Related proteins were then aligned and proteins predicted to not be related or that were significantly shorter in length than group average were removed.en_US
dc.language.isoen_USen_US
dc.relation.isreferencedbyWei Li, Hui Li, Yong-di Liu, Ping Zheng, and James P. Shapleigh (2018) Salinity-Aided Selection of Progressive Onset Denitrifiers as a Means of Providing Nitrite for Anammox. Environmental Science & Technology 2018 52 (18), 10665-10672 DOI: 10.1021/acs.est.8b02314
dc.rightsAttribution 4.0 International*
dc.rights.urihttps://creativecommons.org/licenses/by/4.0/*
dc.subjectDenitrificationen_US
dc.subjectactive-site containing subunitsen_US
dc.subjectprotein sequencesen_US
dc.titleData used in analyses associated with: "Salinity-aided selection of progressive onset denitrifiers as a means of providing nitrite for anammox"en_US
dc.typedataseten_US
dc.relation.isreferencedbyurihttps://doi.org/10.1021/acs.est.8b02314


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