Data used in analyses associated with: "Salinity-aided selection of progressive onset denitrifiers as a means of providing nitrite for anammox"
Shapleigh, James P; Roco, Armanda
This is the protein sequence dataset used for determining reads derived from denitrification genes in Illumina read samples. The protein types in the dataset are the active site containing subunits from the following proteins: Nap – periplasmic nitrate reductase; Nar – membrane associated nitrate reductase; NirK – copper containing nitrite reductase; NirS- heme-containing nitrite reductase; cNor – cytochrome c oxidizing nitrite reductase; qNor – quinol oxidizing nitric oxide reductase and Nos – nitrous oxide reductase. Sequences were initially obtained from the data available from the Integrated Microbial Genomes (IMG) system (https://img.jgi.doe.gov/cgi-bin/m/main.cgi). Related proteins were then aligned and proteins predicted to not be related or that were significantly shorter in length than group average were removed.
Denitrification; active-site containing subunits; protein sequences
Wei Li, Hui Li, Yong-di Liu, Ping Zheng, and James P. Shapleigh (2018) Salinity-Aided Selection of Progressive Onset Denitrifiers as a Means of Providing Nitrite for Anammox. Environmental Science & Technology 2018 52 (18), 10665-10672 DOI: 10.1021/acs.est.8b02314
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