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  4. UNRAVELING NEURONAL DEVELOPMENT THROUGH NOVEL OPTOGENETIC AND GENETIC TOOLS

UNRAVELING NEURONAL DEVELOPMENT THROUGH NOVEL OPTOGENETIC AND GENETIC TOOLS

File(s)
Xu_cornellgrad_0058F_14133.pdf (13.28 MB)
Permanent Link(s)
https://doi.org/10.7298/y2gw-wt12
https://hdl.handle.net/1813/116036
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Cornell Theses and Dissertations
Author
Xu, Yineng
Abstract

Neuron development is a highly orchestrated process that involves the precise coordination of cellular events, molecular signals, and environmental cues. This intricate process lays the foundation for the formation of functional neural circuits, allowing for proper information processing and communication within the nervous system. Understanding the mechanisms underlying neuron development is crucial for unraveling the complexities of brain function and for advancing our knowledge of neurological disorders and potential therapeutic interventions. To dissect the process of neuron development, optogenetics, with its ability to provide precise spatiotemporal manipulation of protein activity, offers a tremendous opportunity to investigate the complex signaling networks in developmental processes. In my dissertation research, I conducted a comprehensive investigation into both extrinsic and intrinsic factors during neuron development. The study focused on three main areas: understanding the response of neurons to nutrient stress, elucidating the role of terminal selectors in determining neuron identity post-mitotically, and developing optogenetics and CRISPR tools for studying neuron development. In the first phase of my research, my colleagues and I demonstrated that somatosensory neurons in the Drosophila peripheral nervous system exhibit organ sparing during nutrient stress. Sensory dendrites preferentially grow compared to non-neural tissues, resulting in dendrite overgrowth. These neurons exhibit lower levels of the stress sensor FoxO, leading to a milder suppression of Tor signaling and no marked induction of autophagy. Preferential dendrite growth enhances animal responses to sensory stimuli, potentially providing a survival advantage under environmental challenges. Next, I identified H6-like-homeobox (Hmx) and Cut as terminal selectors for class II (C2) and III (C3) da neurons, respectively, in Drosophila dendritic arborization (da) sensory neurons. Cut is constantly expressed in C3da neurons to inhibit Hmx expression and maintain C3da identity, while Hmx is required in C2da neurons to suppress Cut expression. Loss of each transcription factor results in upregulation of the other, leading to neuron type conversion. To further advance my research, I developed an innovative optogenetics system, OptoTrap, to manipulate endogenous proteins. I demonstrated that OptoTrap effectively traps GFP-tagged endogenous proteins of diverse sizes, subcellular locations, and functions, allowing for the manipulation of protein function in neurons and epithelial cells. Illumination conditions can be fine-tuned to achieve graded phenotypes and dissect the roles of proteins such as kinesin heavy chain (Khc) and αTubulin84B in dendrite morphogenesis. Besides, together with colleagues, I improved the CRISPR-TRiM tool by optimizing multiplexed gRNA design, enhancing gRNA efficiency in somatic tissues and the germline. I also developed methods to label mutant cells in tissue-specific mutagenesis using co-CRISPR reporters. Additionally, I created genetic reagents for converting Gal4 drivers into tissue-specific Cas9 lines through HACK. In summary, this dissertation underscored the delicate and intricate processes involved in the development of neurons and represented my efforts in advancing the tools to study neuronal development in Drosophila.

Description
318 pages
Date Issued
2024-05
Committee Chair
Han, Chun
Committee Member
Wolfner, Mariana
Fromme, Joseph
Degree Discipline
Genetics, Genomics and Development
Degree Name
Ph. D., Genetics, Genomics and Development
Degree Level
Doctor of Philosophy
Type
dissertation or thesis
Link(s) to Catalog Record
https://newcatalog.library.cornell.edu/catalog/16575553

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