Cornell University
Library
Cornell UniversityLibrary

eCommons

Help
Log In(current)
  1. Home
  2. Cornell University Graduate School
  3. Cornell Theses and Dissertations
  4. Synergistic Action Of Rna Polymerase In Overcoming The Nucleosomal Barrier

Synergistic Action Of Rna Polymerase In Overcoming The Nucleosomal Barrier

File(s)
Jin, JIng.pdf (1.36 MB)
Permanent Link(s)
https://hdl.handle.net/1813/13975
Collections
Cornell Theses and Dissertations
Author
Jin, JIng
Abstract

During gene expression, RNA polymerase (RNAP) encounters a major barrier at a nucleosome and yet it must access the nucleosomal DNA. It has been proposed that multiple RNAPs might increase transcription efficiency through nucleosomal DNA. Here we have quantitatively investigated this hypothesis by using E. coli RNAP as a model system and directly monitoring its location on the DNA via a single molecule DNA unzipping technique. When a single RNAP encountered a nucleosome, it paused with a distinctive 10-bp periodicity and was backtracked by an average distance of ~10-15 bp. When two RNAPs were elongating in close proximity, the trailing RNAP exerted an assisting force on the leading RNAP, reducing its backtracking and enhancing its transcription through a nucleosome ~5-fold. Taken together, our data indicate that histone-DNA interactions within a nucleosome dictate RNAP pausing behavior, and that alleviation of nucleosome-induced backtracking by multiple polymerases is a likely mechanism for overcoming the nucleosomal barrier in vivo.

Date Issued
2009-10-14T19:44:25Z
Keywords
RNA
Type
dissertation or thesis

Site Statistics | Help

About eCommons | Policies | Terms of use | Contact Us

copyright © 2002-2026 Cornell University Library | Privacy | Web Accessibility Assistance